8PXS

Short RNA binding to peptide amyloids


SOLID-STATE NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
1DARR 20 ms10 na [U-13C; U-15N] VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE, 1.5 na [U-13C; U-15N] RNA (5'-R(P*GP*UP*CP*A)-3')100% D2O0.13ambient Pa272Bruker AVANCE III 850
2DARR 150 ms10 na [U-13C; U-15N] VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE, 1.5 na [U-13C; U-15N] RNA (5'-R(P*GP*UP*CP*A)-3')100% D2O0.13ambient Pa272Bruker AVANCE III 850
3NCA10 na [U-13C; U-15N] VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE, 1.5 na [U-13C; U-15N] RNA (5'-R(P*GP*UP*CP*A)-3')100% D2O0.13ambient Pa272Bruker AVANCE III 850
4NCO10 na [U-13C; U-15N] VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE, 1.5 na [U-13C; U-15N] RNA (5'-R(P*GP*UP*CP*A)-3')100% D2O0.13ambient Pa272Bruker AVANCE III 850
5DARR 20 ms10 na mixed VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE, 1.5 na [U-13C; U-15N] RNA (5'-R(P*GP*UP*CP*A)-3')100% D2O0.13ambient Pa272Bruker AVANCE III 850
18DARR 150 ms10 na mixed VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE, 1.5 na [U-13C; U-15N] RNA (5'-R(P*GP*UP*CP*A)-3')100% D2O0.13ambient Pa272Bruker AVANCE III 850
17PAR 8 ms10 na mixed VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE, 1.5 na [U-13C; U-15N] RNA (5'-R(P*GP*UP*CP*A)-3')100% D2O0.13ambient Pa272Bruker AVANCE III 850
16PDSD10 na mixed VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE, 1.5 na [U-13C; U-15N] RNA (5'-R(P*GP*UP*CP*A)-3')100% D2O0.13ambient Pa272Bruker AVANCE III 850
15DARR 20 ms10 na mixed VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE, 1.5 na [U-13C; U-15N] RNA (5'-R(P*GP*UP*CP*A)-3')100% D2O0.13ambient Pa272Bruker AVANCE III 850
14DARR 20 ms10 na [U-13C; U-15N] VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE, 1.5 na RNA (5'-R(P*GP*UP*CP*A)-3')100% D2O0.13ambient Pa272Bruker AVANCE III 850
13NCA10 na [U-13C; U-15N] VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE, 1.5 na RNA (5'-R(P*GP*UP*CP*A)-3')100% D2O0.13ambient Pa272Bruker AVANCE III 850
12NCO10 na [U-13C; U-15N] VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE, 1.5 na RNA (5'-R(P*GP*UP*CP*A)-3')100% D2O0.13ambient Pa272Bruker AVANCE III 850
11DARR 150 ms10 na [U-13C; U-15N] VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE, 1.5 na specificly labeled RNA (5'-R(P*GP*UP*CP*A)-3')100% D2O0.13ambient Pa272Bruker AVANCE III 850
10DARR 450 ms10 na [U-13C; U-15N] VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE, 1.5 na specificly labeled RNA (5'-R(P*GP*UP*CP*A)-3')100% D2O0.13ambient Pa272Bruker AVANCE III 850
9CHHC10 na [U-13C; U-15N] VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE, 1.5 na [U-13C; U-15N] RNA (5'-R(P*GP*UP*CP*A)-3')100% D2O0.13ambient Pa272Bruker AVANCE III 850
8CHHC10 na mixed VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE, 1.5 na [U-13C; U-15N] RNA (5'-R(P*GP*UP*CP*A)-3')100% D2O0.13ambient Pa272Bruker AVANCE III 850
7PAIN 6 ms10 na mixed VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE, 1.5 na [U-13C; U-15N] RNA (5'-R(P*GP*UP*CP*A)-3')100% D2O0.13ambient Pa272Bruker AVANCE III 850
6CHHP10 na [U-13C; U-15N] VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE, 1.5 na RNA (5'-R(P*GP*UP*CP*A)-3')100% D2O0.13ambient Pa272Bruker AVANCE III 850
2031P PDSD10 na [U-13C; U-15N] VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE, 1.5 na RNA (5'-R(P*GP*UP*CP*A)-3')100% D2O0.13ambient Pa272Bruker AVANCE III 850
1931P DP10 na [U-13C; U-15N] VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE, 1.5 na RNA (5'-R(P*GP*UP*CP*A)-3')100% D2O0.13ambient Pa272Bruker AVANCE III 850
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III850
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsCYANA
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number4000
Conformers Submitted Total Number10
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
2chemical shift assignmentXEASYBartels et al.
1structure calculationCYANA3.98.15P. Guntert
4peak pickingXEASYBartels et al.