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Structure of Chloroflexus aggregans flavin based fluorescent protein (CagFbFP) variant I52V A85Q
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6RHF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.2 M Calcium acetate hydrate
0.1 M Sodium cacodylate trihydrate pH 6.5
18% w/v Polyethylene glycol 8,000
Crystal Properties Matthews coefficient Solvent content 2.35 47.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.817 α = 90 b = 110.431 β = 90 c = 39.314 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2023-05-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 1.0000 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 110.43 98.9 0.998 8.5 14 37959
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53 0.447 0.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.5 55.215 37905 1866 98.652 0.199 0.1972 0.1973 0.2285 0.2266 15.989
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.474 0.038 -0.512
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.455 r_dihedral_angle_3_deg 13.704 r_dihedral_angle_2_deg 7.546 r_dihedral_angle_1_deg 7.094 r_lrange_it 5.637 r_lrange_other 5.231 r_scangle_it 3.416 r_scangle_other 3.415 r_scbond_it 2.382 r_scbond_other 2.373
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.455 r_dihedral_angle_3_deg 13.704 r_dihedral_angle_2_deg 7.546 r_dihedral_angle_1_deg 7.094 r_lrange_it 5.637 r_lrange_other 5.231 r_scangle_it 3.416 r_scangle_other 3.415 r_scbond_it 2.382 r_scbond_other 2.373 r_mcangle_it 2.234 r_mcangle_other 2.234 r_angle_refined_deg 1.632 r_mcbond_it 1.512 r_mcbond_other 1.51 r_angle_other_deg 0.748 r_symmetry_nbd_refined 0.236 r_nbd_refined 0.226 r_nbd_other 0.21 r_symmetry_nbd_other 0.188 r_nbtor_refined 0.176 r_xyhbond_nbd_refined 0.172 r_symmetry_xyhbond_nbd_refined 0.127 r_symmetry_nbtor_other 0.082 r_chiral_restr 0.076 r_bond_other_d 0.021 r_bond_refined_d 0.009 r_gen_planes_refined 0.009 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1639 Nucleic Acid Atoms Solvent Atoms 226 Heterogen Atoms 62
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling REFMAC phasing