8PI0
NMR2 Structure of KRAS G12V (GMPPNP bound) in complex with 5-(1H-indol-2-l)piperazin-2-one
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 0.8 mM [U-13C; U-15N] KRAS, 5.0 mM 5-(1H-indol-2-yl)piperazin-2-one | 100% D2O | 125 mM | 7.4 | 1 atm | 298 | Bruker AVANCE NEO 700 |
5 | 2D 1H-13C HSQC | 0.8 mM [U-13C; U-15N] KRAS, 5.0 mM 5-(1H-indol-2-yl)piperazin-2-one | 100% D2O | 125 mM | 7.4 | 1 atm | 298 | Bruker AVANCE NEO 700 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE NEO | 700 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | HADDOCK |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 4 |
Conformers Submitted Total Number | 4 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | HADDOCK | Bonvin | |
2 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
3 | chemical shift assignment | CcpNmr Analysis | CCPN | |
4 | peak picking | CcpNmr Analysis | CCPN |