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Histidine-containing phosphotransfer protein from Chaetomium thermophilum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 294 1.5 M Sodium Citrate pH 6.5
Crystal Properties Matthews coefficient Solvent content 3.03 59.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.885 α = 90 b = 149.334 β = 101.02 c = 65.365 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2020-11-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97950 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 74.78 99.9 0.091 0.098 0.038 0.994 10.6 6.7 35171
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 99.7 0.57 0.623 0.248 0.87 6.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 74.78 33381 1784 99.82 0.23115 0.22929 0.2647 0.2841 RANDOM 51.72
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.37 -1.63 -1 1.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.759 r_long_range_B_refined 6.805 r_long_range_B_other 6.804 r_dihedral_angle_2_deg 5.59 r_scangle_other 5.239 r_dihedral_angle_1_deg 4.746 r_mcangle_it 4.344 r_mcangle_other 4.343 r_scbond_it 3.123 r_scbond_other 3.122
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.759 r_long_range_B_refined 6.805 r_long_range_B_other 6.804 r_dihedral_angle_2_deg 5.59 r_scangle_other 5.239 r_dihedral_angle_1_deg 4.746 r_mcangle_it 4.344 r_mcangle_other 4.343 r_scbond_it 3.123 r_scbond_other 3.122 r_mcbond_it 2.739 r_mcbond_other 2.739 r_angle_refined_deg 0.965 r_angle_other_deg 0.37 r_chiral_restr 0.046 r_bond_other_d 0.005 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4013 Nucleic Acid Atoms Solvent Atoms 86 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction BALBES phasing