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SARS-CoV-2 S protein S:D614G mutant in 3-down with binding site of an entry inhibitor
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.277 r_long_range_B_refined 19.166 r_long_range_B_other 19.166 r_dihedral_angle_3_deg 15.576 r_dihedral_angle_4_deg 14.551 r_mcangle_it 5.179 r_mcangle_other 5.179 r_dihedral_angle_1_deg 4.165 r_scangle_other 3.082 r_mcbond_it 2.735
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.277 r_long_range_B_refined 19.166 r_long_range_B_other 19.166 r_dihedral_angle_3_deg 15.576 r_dihedral_angle_4_deg 14.551 r_mcangle_it 5.179 r_mcangle_other 5.179 r_dihedral_angle_1_deg 4.165 r_scangle_other 3.082 r_mcbond_it 2.735 r_mcbond_other 2.735 r_angle_refined_deg 1.642 r_scbond_it 1.411 r_scbond_other 1.411 r_angle_other_deg 1.389 r_chiral_restr 0.084 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.005 r_gen_planes_other 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Spike glycoprotein - Severe acute respiratory syndrome coronavirus 2
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument LEICA EM GP Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 97094 Reported Resolution (Å) 4.3 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON III (4k x 4k) Electron Dose (electrons/Å**2) 30
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TALOS ARCTICA Minimum Defocus (nm) 1000 Maximum Defocus (nm) 2500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode OTHER Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION Scipion MODEL REFINEMENT REFMAC 5.8.0158 IMAGE ACQUISITION EPU
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION