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TarM(Se)_G117R-UDP-4RboP-glucose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.9 293 10% PEG 20 000, 25% PEG MME 550, 0.1 M MES/imidazole, pH 6.9, 0.02 M sodium formate, 0.02 M ammonium acetate, 0.02 M trisodium citrate, 0.02 M sodium potassium tartrate (racemic), 0.02 M sodium oxamate.
Crystal Properties Matthews coefficient Solvent content 2.49 50.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.62 α = 90.015 b = 75.75 β = 90.039 c = 129.4 γ = 90.031
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2020-12-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 0.9998671568878699 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.848 49.23 99.9 0.99 5.8 4.6 51972
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.848 2.92 100 0.41
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MIR FREE R-VALUE 2.848 49.204 51971 2691 99.752 0.23 0.2283 0.2293 0.2664 0.2641 48.793
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -13.915 15.052 -5.92 55.116 31.486 -41.201
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.622 r_dihedral_angle_3_deg 22.562 r_dihedral_angle_4_deg 22.021 r_lrange_it 5.399 r_lrange_other 5.399 r_dihedral_angle_1_deg 3.803 r_mcangle_it 3.074 r_mcangle_other 3.074 r_scangle_it 2.504 r_scangle_other 2.504
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.622 r_dihedral_angle_3_deg 22.562 r_dihedral_angle_4_deg 22.021 r_lrange_it 5.399 r_lrange_other 5.399 r_dihedral_angle_1_deg 3.803 r_mcangle_it 3.074 r_mcangle_other 3.074 r_scangle_it 2.504 r_scangle_other 2.504 r_mcbond_it 1.973 r_mcbond_other 1.972 r_scbond_it 1.66 r_scbond_other 1.66 r_angle_other_deg 1.414 r_angle_refined_deg 1.094 r_symmetry_nbd_refined 0.297 r_nbd_other 0.229 r_symmetry_nbd_other 0.204 r_nbd_refined 0.191 r_nbtor_refined 0.171 r_symmetry_nbtor_other 0.076 r_xyhbond_nbd_refined 0.068 r_chiral_restr 0.044 r_chiral_restr_other 0.021 r_symmetry_xyhbond_nbd_refined 0.019 r_bond_refined_d 0.003 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14004 Nucleic Acid Atoms Solvent Atoms 734 Heterogen Atoms 423
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing