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TarM(Se)_G117R-UDP-glucose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.9 293 10% PEG 20 000, 25% PEG MME 550, 0.1 M MES/imidazole, pH 6.9, 0.03 M NaNO3, 0.03 M Na2HPO4, 0.03 M (NH4)2SO4.
Crystal Properties Matthews coefficient Solvent content 2.14 42.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.65 α = 90 b = 88.73 β = 90 c = 98.05 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2020-02-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.00000 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.03 49.03 100 0.999 15.64 13.2 33765
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.03 2.08 100 0.52
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MIR FREE R-VALUE 2.03 49.025 33764 1689 99.976 0.203 0.2012 0.2059 0.2381 0.2438 34.271
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.034 -0.139 -3.895
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.614 r_dihedral_angle_4_deg 17.389 r_dihedral_angle_3_deg 15.39 r_lrange_it 8.052 r_lrange_other 8.052 r_scangle_it 6.093 r_scangle_other 6.092 r_mcangle_it 5.632 r_mcangle_other 5.632 r_dihedral_angle_1_deg 5.562
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.614 r_dihedral_angle_4_deg 17.389 r_dihedral_angle_3_deg 15.39 r_lrange_it 8.052 r_lrange_other 8.052 r_scangle_it 6.093 r_scangle_other 6.092 r_mcangle_it 5.632 r_mcangle_other 5.632 r_dihedral_angle_1_deg 5.562 r_scbond_it 4.948 r_scbond_other 4.947 r_mcbond_it 4.674 r_mcbond_other 4.654 r_angle_other_deg 1.341 r_angle_refined_deg 1.143 r_symmetry_nbd_refined 0.233 r_symmetry_nbd_other 0.181 r_nbd_refined 0.179 r_symmetry_xyhbond_nbd_refined 0.178 r_nbd_other 0.168 r_nbtor_refined 0.164 r_xyhbond_nbd_refined 0.137 r_symmetry_nbtor_other 0.073 r_chiral_restr 0.058 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3847 Nucleic Acid Atoms Solvent Atoms 290 Heterogen Atoms 81
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing