8OR5
Solution NMR structure of Notch1 TMD
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 500 uM Notch1 WT TMD | trifluoroethanol/water 80/20 | 6.5 | 1 bar | 300 | Bruker AVANCE III 600 | |
2 | 2D 1H-1H TOCSY | 500 uM Notch1 WT TMD | trifluoroethanol/water 80/20 | 6.5 | 1 bar | 300 | Bruker AVANCE III 600 | |
3 | 2D 1H-13C HSQC | 500 uM Notch1 WT TMD | trifluoroethanol/water 80/20 | 6.5 | 1 bar | 300 | Bruker AVANCE III 600 | |
4 | 2D 1H-15N HSQC | 500 uM Notch1 WT TMD | trifluoroethanol/water 80/20 | 6.5 | 1 bar | 300 | Bruker AVANCE III 600 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 400 |
Conformers Submitted Total Number | 40 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | CNS | 1.2.1 | Brunger, Adams, Clore, Gros, Nilges and Read |
2 | structure calculation | ARIA | 2.3.2 | Linge, O'Donoghue and Nilges |
3 | chemical shift assignment | CcpNmr Analysis | 2.4.2 | Vranken WF, Boucher W, Stevens TJ, Fogh RH, Pajon A, Llinas M, Ulrich EL, Markley JL, Ionides J, Laue ED. |
4 | peak picking | CcpNmr Analysis | 2.4.2 | Vranken WF, Boucher W, Stevens TJ, Fogh RH, Pajon A, Llinas M, Ulrich EL, Markley JL, Ionides J, Laue ED. |