8OQG

Cross-linked crystal of dirhodium tetraacetate/ribonuclease A adduct in the P3221 space group (high temperature data collection)

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	5.2	293	2.5 M NaCl 3.3 M HCOONa 0.1 M Acetate buffer

Crystal Properties
Matthews coefficient	Solvent content
3.14	60.84

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 67.278	α = 90
b = 67.278	β = 90
c = 65.899	γ = 120

Symmetry
Space Group	P 32 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	273	PIXEL	RIGAKU HyPix-6000HE		2022-07-01	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE	RIGAKU PhotonJet-R	1.5406

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.6	22.02	99.9	0.079	0.079	0.994	6.9	1.8		23142

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.6	1.63	99.2		1.062	1.062	0.339	0.6	1.8

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.6	22.02	23142	1164	99.836	0.183	0.1823	0.2015	21.27

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.038	0.019		0.038		-0.124

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.613
r_dihedral_angle_3_deg	14.611
r_dihedral_angle_2_deg	8.997
r_lrange_it	7.776
r_lrange_other	7.237
r_dihedral_angle_1_deg	6.395
r_scangle_other	4.489
r_scangle_it	4.484
r_mcangle_it	3.698
r_mcangle_other	3.696
r_angle_refined_deg	3.219
r_scbond_it	3.013
r_scbond_other	2.979
r_mcbond_other	2.43
r_mcbond_it	2.427
r_angle_other_deg	0.542
r_symmetry_nbd_refined	0.352
r_nbd_other	0.239
r_symmetry_xyhbond_nbd_refined	0.225
r_nbd_refined	0.201
r_symmetry_nbd_other	0.195
r_nbtor_refined	0.177
r_xyhbond_nbd_refined	0.165
r_symmetry_nbtor_other	0.084
r_chiral_restr	0.077
r_bond_refined_d	0.011
r_gen_planes_refined	0.01
r_gen_planes_other	0.003
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	951
Nucleic Acid Atoms
Solvent Atoms	127
Heterogen Atoms	28

Software

Software
Software Name	Purpose
REFMAC	refinement
CrysalisPro	data reduction
Aimless	data scaling
PHASER	phasing