8OOT
CryoEM Structure INO80core Hexasome complex Arp5 Ies6 refinement state2
ELECTRON MICROSCOPY
Starting Model(s)
Initial Refinement Model(s) | |||
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Type | Source | Accession Code | Details |
experimental model | PDB | 6FML |
Refinement
RMS Deviations | |
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Key | Refinement Restraint Deviation |
f_dihedral_angle_d | 12.9001 |
f_angle_d | 0.9645 |
f_chiral_restr | 0.0682 |
f_bond_d | 0.0126 |
f_plane_restr | 0.0111 |
Sample |
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INO80 core module in complex with hexasome |
Sample Components |
Arp6-Ies6 of INO80 complex |
Specimen Preparation | |
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Sample Aggregation State | PARTICLE |
Vitrification Instrument | FEI VITROBOT MARK IV |
Cryogen Name | ETHANE |
Sample Vitrification Details | wait time of 5s, blot force at 3, and a blot time of 2s with Whatman blotting paper (Cytiva, CAT No. 10311807) |
3D Reconstruction | |
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Reconstruction Method | SINGLE PARTICLE |
Number of Particles | 98967 |
Reported Resolution (Å) | 2.85 |
Resolution Method | FSC 0.143 CUT-OFF |
Other Details | |
Refinement Type | |
Symmetry Type | POINT |
Map-Model Fitting and Refinement | |||||
---|---|---|---|---|---|
Id | 1 (6FML) | ||||
Refinement Space | |||||
Refinement Protocol | OTHER | ||||
Refinement Target | |||||
Overall B Value | |||||
Fitting Procedure | |||||
Details |
Data Acquisition | |||||||||
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Detector Type | GATAN K3 (6k x 4k) | ||||||||
Electron Dose (electrons/Å**2) | 50.36 |
Imaging Experiment | 1 |
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Date of Experiment | |
Temperature (Kelvin) | |
Microscope Model | FEI TITAN KRIOS |
Minimum Defocus (nm) | 800 |
Maximum Defocus (nm) | 2000 |
Minimum Tilt Angle (degrees) | |
Maximum Tilt Angle (degrees) | |
Nominal CS | |
Imaging Mode | BRIGHT FIELD |
Specimen Holder Model | FEI TITAN KRIOS AUTOGRID HOLDER |
Nominal Magnification | |
Calibrated Magnification | |
Source | FIELD EMISSION GUN |
Acceleration Voltage (kV) | 300 |
Imaging Details |
EM Software | ||
---|---|---|
Task | Software Package | Version |
IMAGE ACQUISITION | SerialEM | |
CTF CORRECTION | CTFFIND | 4.1.14 |
MODEL FITTING | ISOLDE | 1.4 |
MODEL FITTING | Coot | 0.9.7 |
INITIAL EULER ASSIGNMENT | RELION | 4.0 |
RECONSTRUCTION | RELION | 4 |
MODEL REFINEMENT | PHENIX | 1.20.1 |
Image Processing | ||||
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CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
PHASE FLIPPING AND AMPLITUDE CORRECTION | 2137460 | Particles were initially picked by WARP to generate an initial model, which was subsequently used for the 3D template picking |