8OL8
Solution NMR Structure of Lactamised Alpha-Synuclein 2-12 Peptide in 50% TFE.
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-13C HSQC | 1 mM aSyn1-12, 20 mM potassium phosphate, 10 % v/v [U-99% 2H] D2O, 50 % v/v [U-100% 2H] 2,2,2-Trifluoroethanol | trifluoroethanol/water | 20 mM | 6.5 | 1 atm | 298 | Bruker AVANCE NEO 700 |
2 | 2D 1H-1H NOESY | 1 mM aSyn1-12, 20 mM potassium phosphate, 10 % v/v [U-99% 2H] D2O, 50 % v/v [U-100% 2H] 2,2,2-Trifluoroethanol | trifluoroethanol/water | 20 mM | 6.5 | 1 atm | 298 | Bruker AVANCE NEO 700 |
3 | 2D 1H-1H TOCSY | 1 mM aSyn1-12, 20 mM potassium phosphate, 10 % v/v [U-99% 2H] D2O, 50 % v/v [U-100% 2H] 2,2,2-Trifluoroethanol | trifluoroethanol/water | 20 mM | 6.5 | 1 atm | 298 | Bruker AVANCE NEO 700 |
4 | 2D 1H-15N HSQC | 1 mM aSyn1-12, 20 mM potassium phosphate, 10 % v/v [U-99% 2H] D2O, 50 % v/v [U-100% 2H] 2,2,2-Trifluoroethanol | trifluoroethanol/water | 20 mM | 6.5 | 1 atm | 298 | Bruker AVANCE NEO 700 |
5 | 2D 1H-1H COSY | 1 mM aSyn1-12, 20 mM potassium phosphate, 10 % v/v [U-99% 2H] D2O, 50 % v/v [U-100% 2H] 2,2,2-Trifluoroethanol | trifluoroethanol/water | 20 mM | 6.5 | 1 atm | 298 | Bruker AVANCE NEO 700 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE NEO | 700 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | CNS | 1.21 | Brunger, Adams, Clore, Gros, Nilges and Read |
2 | structure calculation | ARIA | 2.3.2 | Linge, O'Donoghue and Nilges |
3 | chemical shift assignment | CcpNmr Analysis | 2.4.2 | CCPN |
4 | peak picking | CcpNmr Analysis | 2.4.2 | CCPN |
5 | data analysis | DANGLE | 1.1 | Cheung MS, Maguire ML, Stevens TJ, Broadhurst RW. |
6 | collection | TopSpin | 3.6.1 | Bruker Biospin |
8 | processing | TopSpin | 3.6.1 | Bruker Biospin |