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HSV-1 DNA polymerase-processivity factor complex in exonuclease state
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7LUF
Refinement RMS Deviations Key Refinement Restraint Deviation r_lrange_other 18.676 r_lrange_it 18.665 r_dihedral_angle_6_deg 16.21 r_dihedral_angle_3_deg 12.74 r_scangle_it 9.151 r_scangle_other 9.151 r_mcangle_it 7.586 r_mcangle_other 7.586 r_dihedral_angle_1_deg 6.39 r_dihedral_angle_2_deg 5.368
RMS Deviations Key Refinement Restraint Deviation r_lrange_other 18.676 r_lrange_it 18.665 r_dihedral_angle_6_deg 16.21 r_dihedral_angle_3_deg 12.74 r_scangle_it 9.151 r_scangle_other 9.151 r_mcangle_it 7.586 r_mcangle_other 7.586 r_dihedral_angle_1_deg 6.39 r_dihedral_angle_2_deg 5.368 r_scbond_it 5.226 r_scbond_other 5.226 r_mcbond_it 4.649 r_mcbond_other 4.649 r_angle_refined_deg 1.305 r_dihedral_angle_other_2_deg 0.437 r_angle_other_deg 0.433 r_nbd_refined 0.221 r_symmetry_nbd_other 0.198 r_metal_ion_refined 0.194 r_nbtor_refined 0.181 r_xyhbond_nbd_refined 0.177 r_chiral_restr 0.093 r_symmetry_xyhbond_nbd_other 0.086 r_symmetry_nbtor_other 0.075 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_gen_planes_other 0.001 r_bond_other_d
Sample HSV-1 DNA polymerase-processivity factor complex in exonuclease state
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE-PROPANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 539028 Reported Resolution (Å) 1.87 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (7LUF) Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 58
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 1500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 165000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 3.3 IMAGE ACQUISITION EPU CTF CORRECTION CTFFIND 4.1 MODEL FITTING UCSF ChimeraX INITIAL EULER ASSIGNMENT cryoSPARC 3.3 FINAL EULER ASSIGNMENT cryoSPARC 4 RECONSTRUCTION cryoSPARC 4 MODEL REFINEMENT Coot
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details NONE