☰ Navigation Tabs
HSV-1 DNA polymerase-processivity factor complex in halted elongation state
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7LUF
Refinement RMS Deviations Key Refinement Restraint Deviation r_lrange_it 29.363 r_lrange_other 29.363 r_dihedral_angle_6_deg 15.651 r_scangle_it 15.527 r_scangle_other 15.527 r_mcangle_it 14.467 r_mcangle_other 14.466 r_dihedral_angle_3_deg 14.302 r_scbond_it 8.742 r_scbond_other 8.742
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 29.363 r_lrange_other 29.363 r_dihedral_angle_6_deg 15.651 r_scangle_it 15.527 r_scangle_other 15.527 r_mcangle_it 14.467 r_mcangle_other 14.466 r_dihedral_angle_3_deg 14.302 r_scbond_it 8.742 r_scbond_other 8.742 r_mcbond_it 8.254 r_mcbond_other 8.253 r_dihedral_angle_1_deg 7.12 r_dihedral_angle_2_deg 6.485 r_angle_refined_deg 1.391 r_dihedral_angle_other_2_deg 0.461 r_angle_other_deg 0.442 r_nbd_refined 0.208 r_symmetry_nbd_other 0.198 r_nbtor_refined 0.187 r_xyhbond_nbd_refined 0.103 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.065 r_chiral_restr_other 0.032 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_gen_planes_other 0.001 r_bond_other_d
Sample HSV-1 DNA polymerase-processivity factor complex in halted elongation state
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE-PROPANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 213621 Reported Resolution (Å) 2.46 Resolution Method FSC 0.143 CUT-OFF Other Details cryoSPARC Non-uniform refinement Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (7LUF) Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 105000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 3.3 IMAGE ACQUISITION EPU CTF CORRECTION CTFFIND 4.1 MODEL FITTING UCSF ChimeraX MODEL REFINEMENT Coot 0.9.8 INITIAL EULER ASSIGNMENT cryoSPARC 3.3 FINAL EULER ASSIGNMENT cryoSPARC 4 RECONSTRUCTION cryoSPARC 4
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION