8OH4

Subtomogram averaging structure of cofilactin filament inside microtubule lumen of Drosophila S2 cell protrusion.


ELECTRON MICROSCOPY
Sample
Cofilactin filament inside the microtubule lumen of induced Drosophila S2 cell protrusion
Specimen Preparation
Sample Aggregation StateFILAMENT
Vitrification InstrumentFEI VITROBOT MARK III
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSUBTOMOGRAM AVERAGING
Number of Particles3801
Reported Resolution (Å)16.5
Resolution MethodFSC 0.143 CUT-OFF
Other Detailshelical symmetry (-162 twist, 29A rise) was applied during 3D classification but not during refinements.
Refinement Type
Symmetry TypePOINT
Point SymmetryC1
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
DetailsDrosophila cofilin and actin structures were predicted as a complex with Alphafold 2-Multimer. Actin from the predicted cofilin-actin complex was iter ...Drosophila cofilin and actin structures were predicted as a complex with Alphafold 2-Multimer. Actin from the predicted cofilin-actin complex was iteratively aligned with 8 actin subunits in the chicken cofilactin PDB model 5yU8. Two cofilin moieties at the pointed end were removed. Side chains were truncated. The model was not refined.
Data Acquisition
Detector TypeGATAN K2 SUMMIT (4k x 4k)
Electron Dose (electrons/Å**2)3
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelFEI TITAN KRIOS
Minimum Defocus (nm)2500
Maximum Defocus (nm)6000
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
IMAGE ACQUISITIONSerialEM4.1.0beta
CLASSIFICATIONRELION3.1
RECONSTRUCTIONRELION3.1
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTIONCTF estimation was performed in WARP. CTF correction was performed in Relion 3.1.