8OFY

Molecular Mechanism of trypanosomal AQP2


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_long_range_B_refined43.804
r_long_range_B_other43.803
r_scangle_other31.184
r_mcangle_other25.79
r_mcangle_it25.755
r_scbond_it19.799
r_scbond_other19.788
r_mcbond_it16.89
r_mcbond_other16.881
r_dihedral_angle_3_deg16.076
RMS Deviations
KeyRefinement Restraint Deviation
r_long_range_B_refined43.804
r_long_range_B_other43.803
r_scangle_other31.184
r_mcangle_other25.79
r_mcangle_it25.755
r_scbond_it19.799
r_scbond_other19.788
r_mcbond_it16.89
r_mcbond_other16.881
r_dihedral_angle_3_deg16.076
r_dihedral_angle_1_deg6.43
r_dihedral_angle_2_deg5.8
r_angle_refined_deg1.525
r_angle_other_deg0.585
r_chiral_restr0.069
r_gen_planes_refined0.007
r_bond_refined_d0.006
r_gen_planes_other0.003
r_bond_other_d
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Sample
Aquaporin 2 tetramer wildtype
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification InstrumentFEI VITROBOT MARK IV
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles83845
Reported Resolution (Å)3.7
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Point SymmetryC4
Map-Model Fitting and Refinement
Id1
Refinement SpaceRECIPROCAL
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K3 BIOQUANTUM (6k x 4k)
Electron Dose (electrons/Å**2)56
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelFEI TITAN KRIOS
Minimum Defocus (nm)1000
Maximum Defocus (nm)3000
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder ModelFEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
IMAGE ACQUISITIONEPU
CTF CORRECTIONGctf
INITIAL EULER ASSIGNMENTcryoSPARC
FINAL EULER ASSIGNMENTcryoSPARC
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION100075