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Human adenovirus type 53 fiber-knob protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.2 M potassium thiocyanate, 20 % w/v PEG 3350, pH unadjusted
Crystal Properties Matthews coefficient Solvent content 2.3 46.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 206.314 α = 90 b = 60.526 β = 91.8 c = 93.837 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-12-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.91188 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.606 70.489 99.7 0.099 0.116 0.059 0.998 8.7 3.7 150644 20.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.606 1.633 99.4 1.569 1.853 0.972 0.334 0.8 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.61 68.42 142637 7463 99.31 0.19231 0.19125 0.1973 0.21275 0.2178 RANDOM 25.206
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.52 0.21 -1.28 0.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.753 r_dihedral_angle_4_deg 18.265 r_dihedral_angle_3_deg 13.504 r_dihedral_angle_1_deg 7.779 r_long_range_B_refined 6.911 r_long_range_B_other 6.867 r_angle_refined_deg 1.562 r_mcangle_it 1.41 r_mcangle_other 1.41 r_angle_other_deg 1.368
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.753 r_dihedral_angle_4_deg 18.265 r_dihedral_angle_3_deg 13.504 r_dihedral_angle_1_deg 7.779 r_long_range_B_refined 6.911 r_long_range_B_other 6.867 r_angle_refined_deg 1.562 r_mcangle_it 1.41 r_mcangle_other 1.41 r_angle_other_deg 1.368 r_scangle_other 1.279 r_scbond_it 0.877 r_scbond_other 0.877 r_mcbond_it 0.789 r_mcbond_other 0.789 r_chiral_restr 0.078 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8832 Nucleic Acid Atoms Solvent Atoms 982 Heterogen Atoms 158
Software Software Software Name Purpose REFMAC refinement Aimless data scaling xia2 data reduction PHASER phasing