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Human adenovirus type 32 fiber-knob protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 291 0.1 M SPG Buffer, 25% PEG 1500
Crystal Properties Matthews coefficient Solvent content 2.22 44.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.946 α = 90 b = 93.648 β = 98.45 c = 94.84 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-12-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.91188 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 93.81 99.4 0.102 0.119 0.062 0.992 5.9 3.6 39152 28
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 94.8 0.551 0.658 0.353 0.831 1.4 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 93.81 36587 1834 98.19 0.21994 0.21809 0.2251 0.25641 0.2618 RANDOM 39.047
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.35 1.65 -1.96 1.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.69 r_dihedral_angle_4_deg 15.849 r_dihedral_angle_3_deg 15.283 r_dihedral_angle_1_deg 9.267 r_long_range_B_refined 5.218 r_long_range_B_other 5.174 r_scangle_other 2.242 r_mcangle_it 2.189 r_mcangle_other 2.189 r_angle_refined_deg 1.489
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.69 r_dihedral_angle_4_deg 15.849 r_dihedral_angle_3_deg 15.283 r_dihedral_angle_1_deg 9.267 r_long_range_B_refined 5.218 r_long_range_B_other 5.174 r_scangle_other 2.242 r_mcangle_it 2.189 r_mcangle_other 2.189 r_angle_refined_deg 1.489 r_scbond_it 1.412 r_scbond_other 1.411 r_mcbond_it 1.36 r_mcbond_other 1.358 r_angle_other_deg 1.241 r_chiral_restr 0.069 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4640 Nucleic Acid Atoms Solvent Atoms 317 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DIALS data scaling xia2 data reduction PHASER phasing