X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
in silico modelAlphaFold 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP291.15320% PEG 5000-MME, 0.1M Bis-Tris pH 6.5
Crystal Properties
Matthews coefficientSolvent content
3.2161.63

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 108.114α = 90
b = 56.377β = 91.01
c = 108.13γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2023-04-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL19U10.97853SSRFBL19U1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6449.9998.80.99713.26.2157933
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.641.670.6552.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.6449.99150266764893.80.176910.175950.19542RANDOM19.534
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.295.41-3.811.52
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.762
r_dihedral_angle_4_deg16.722
r_dihedral_angle_3_deg13.225
r_dihedral_angle_1_deg7.079
r_long_range_B_refined5.701
r_long_range_B_other5.367
r_scangle_other4.038
r_scbond_it2.781
r_scbond_other2.78
r_mcangle_other2.765
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.762
r_dihedral_angle_4_deg16.722
r_dihedral_angle_3_deg13.225
r_dihedral_angle_1_deg7.079
r_long_range_B_refined5.701
r_long_range_B_other5.367
r_scangle_other4.038
r_scbond_it2.781
r_scbond_other2.78
r_mcangle_other2.765
r_mcangle_it2.764
r_mcbond_it2.013
r_mcbond_other2.01
r_angle_refined_deg1.968
r_angle_other_deg1.513
r_chiral_restr0.1
r_bond_refined_d0.014
r_gen_planes_refined0.012
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7206
Nucleic Acid Atoms
Solvent Atoms1095
Heterogen Atoms117

Software

Software
Software NamePurpose
Blu-Icedata collection
XDSdata reduction
Aimlessdata scaling
PHENIXphasing