X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP295.150.2 M Magnesium chloride hexahydrate, 0.1 M Tris pH 8.5, and 25 % (w/v) Polyethylene glycol (PEG) 3350
Crystal Properties
Matthews coefficientSolvent content
2.4549.85

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 44.621α = 90
b = 64.781β = 98.361
c = 80.617γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 9M2020-11-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPAL/PLS BEAMLINE 5C (4A)0.9794PAL/PLS5C (4A)

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.25099.70.97712.78422882
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.240.841

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE2.20644.18621786109194.4220.2030.20210.228629.79
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.6190.261-0.591-0.101
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg25.972
r_dihedral_angle_3_deg12.063
r_dihedral_angle_4_deg11.949
r_dihedral_angle_1_deg6.353
r_lrange_it3.78
r_lrange_other3.694
r_mcangle_it2.275
r_mcangle_other2.275
r_scangle_it1.951
r_scangle_other1.95
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg25.972
r_dihedral_angle_3_deg12.063
r_dihedral_angle_4_deg11.949
r_dihedral_angle_1_deg6.353
r_lrange_it3.78
r_lrange_other3.694
r_mcangle_it2.275
r_mcangle_other2.275
r_scangle_it1.951
r_scangle_other1.95
r_mcbond_it1.263
r_mcbond_other1.262
r_angle_refined_deg1.179
r_scbond_it1.107
r_scbond_other1.106
r_angle_other_deg1.07
r_nbd_refined0.177
r_symmetry_nbd_other0.162
r_nbtor_refined0.162
r_nbd_other0.15
r_xyhbond_nbd_refined0.139
r_symmetry_nbd_refined0.114
r_symmetry_xyhbond_nbd_refined0.104
r_symmetry_nbtor_other0.07
r_chiral_restr0.04
r_gen_planes_refined0.003
r_bond_refined_d0.002
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3292
Nucleic Acid Atoms
Solvent Atoms156
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
d*TREKdata reduction
HKL-2000data scaling
PHASERphasing