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Cryo-EM structure of Euglena gracilis complex I, NADH state
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 12.2753 f_angle_d 0.509 f_chiral_restr 0.0405 f_plane_restr 0.0039 f_bond_d 0.0031
Sample Euglena gracilis respiratory complex I, NADH state
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 76643 Reported Resolution (Å) 3.03 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 61.5
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 800 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 130000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION crYOLO 1.6.0 IMAGE ACQUISITION EPU CTF CORRECTION CTFFIND 4.1 MODEL FITTING PHENIX 1.20.1 MODEL FITTING Coot 0.9.6 INITIAL EULER ASSIGNMENT cryoSPARC v3.3.2 FINAL EULER ASSIGNMENT cryoSPARC v3.3.2 CLASSIFICATION cryoSPARC v3.3.2 RECONSTRUCTION cryoSPARC v3.3.2 MODEL REFINEMENT PHENIX 1.20.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 468732