8J9A

Solution structure of ABD3 (residues 453-561) of human MED15 isoform 2


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1 mM [U-99% 13C; U-99% 15N] MED15_ABD3, 20 mM HEPES, 200 mM sodium chloride, 1 mM TCEP, 6 % v/v D2O94% H2O/6% D2O200 mM7.51 atm298Bruker AVANCE III 600
22D 1H-13C HSQC1 mM [U-99% 13C; U-99% 15N] MED15_ABD3, 20 mM HEPES, 200 mM sodium chloride, 1 mM TCEP, 6 % v/v D2O94% H2O/6% D2O200 mM7.51 atm298Bruker AVANCE III 600
32D 1H-13C HSQC aromatic1 mM [U-99% 13C; U-99% 15N] MED15_ABD3, 20 mM HEPES, 200 mM sodium chloride, 1 mM TCEP, 6 % v/v D2O94% H2O/6% D2O200 mM7.51 atm298Bruker AVANCE III 600
43D CBCA(CO)NH1 mM [U-99% 13C; U-99% 15N] MED15_ABD3, 20 mM HEPES, 200 mM sodium chloride, 1 mM TCEP, 6 % v/v D2O94% H2O/6% D2O200 mM7.51 atm298Bruker AVANCE III 600
53D CBCANH1 mM [U-99% 13C; U-99% 15N] MED15_ABD3, 20 mM HEPES, 200 mM sodium chloride, 1 mM TCEP, 6 % v/v D2O94% H2O/6% D2O200 mM7.51 atm298Bruker AVANCE III 600
63D HNCA1 mM [U-99% 13C; U-99% 15N] MED15_ABD3, 20 mM HEPES, 200 mM sodium chloride, 1 mM TCEP, 6 % v/v D2O94% H2O/6% D2O200 mM7.51 atm298Bruker AVANCE III 600
73D HN(CO)CA1 mM [U-99% 13C; U-99% 15N] MED15_ABD3, 20 mM HEPES, 200 mM sodium chloride, 1 mM TCEP, 6 % v/v D2O94% H2O/6% D2O200 mM7.51 atm298Bruker AVANCE III 600
83D HNCO1 mM [U-99% 13C; U-99% 15N] MED15_ABD3, 20 mM HEPES, 200 mM sodium chloride, 1 mM TCEP, 6 % v/v D2O94% H2O/6% D2O200 mM7.51 atm298Bruker AVANCE III 600
93D HN(CA)CO1 mM [U-99% 13C; U-99% 15N] MED15_ABD3, 20 mM HEPES, 200 mM sodium chloride, 1 mM TCEP, 6 % v/v D2O94% H2O/6% D2O200 mM7.51 atm298Bruker AVANCE III 600
103D HBHA(CO)NH1 mM [U-99% 13C; U-99% 15N] MED15_ABD3, 20 mM HEPES, 200 mM sodium chloride, 1 mM TCEP, 6 % v/v D2O94% H2O/6% D2O200 mM7.51 atm298Bruker AVANCE III 600
113D C(CO)NH1 mM [U-99% 13C; U-99% 15N] MED15_ABD3, 20 mM HEPES, 200 mM sodium chloride, 1 mM TCEP, 6 % v/v D2O94% H2O/6% D2O200 mM7.51 atm298Bruker AVANCE III 600
123D H(CCO)NH1 mM [U-99% 13C; U-99% 15N] MED15_ABD3, 20 mM HEPES, 200 mM sodium chloride, 1 mM TCEP, 6 % v/v D2O94% H2O/6% D2O200 mM7.51 atm298Bruker AVANCE III 600
133D 1H-15N NOESY1 mM [U-99% 13C; U-99% 15N] MED15_ABD3, 20 mM HEPES, 200 mM sodium chloride, 1 mM TCEP, 6 % v/v D2O94% H2O/6% D2O200 mM7.51 atm298Bruker AVANCE III 600
143D 1H-13C NOESY1 mM [U-99% 13C; U-99% 15N] MED15_ABD3, 20 mM HEPES, 200 mM sodium chloride, 1 mM TCEP, 6 % v/v D2O94% H2O/6% D2O200 mM7.51 atm298Bruker AVANCE III 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III600
NMR Refinement
MethodDetailsSoftware
simulated annealingARIA2alpha
torsion angle dynamicsARIA2alpha
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number500
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpinBruker Biospin
2structure calculationARIA2alphaWolfgang Rieping, Michael Habeck, Benjamin Bardiaux, Aymeric Bernard, Therese E. Malliavin, Michael Nilges
3chemical shift assignmentNMRFAM-SPARKYLee W, Tonelli M, Markley JL
4peak pickingNMRFAM-SPARKYLee W, Tonelli M, Markley JL
5processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
6refinementARIA2alphaWolfgang Rieping, Michael Habeck, Benjamin Bardiaux, Aymeric Bernard, Therese E. Malliavin, Michael Nilges