8J3V
Structure of the transmembrane domain of human PD-L2
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.5 mM [U-15N] PD-L2_TM | 90% H2O/10% D2O | 0 mM | 6.5 | 0.1 atm | 310 | Bruker AVANCE 600 |
2 | 2D 1H-13C HSQC | 0.5 mM [U-13C; U-15N] PD-L2_TM | 90% H2O/10% D2O | 0 mM | 6.5 | 0.1 atm | 310 | Bruker AVANCE 900 |
3 | 3D HNCO | 0.5 mM [U-13C; U-15N; U-2H] PD-L2_TM | 90% H2O/10% D2O | 0 mM | 6.5 | 0.1 atm | 310 | Bruker AVANCE 600 |
4 | 3D HNCA | 0.5 mM [U-13C; U-15N; U-2H] PD-L2_TM | 90% H2O/10% D2O | 0 mM | 6.5 | 0.1 atm | 310 | Bruker AVANCE 600 |
5 | 3D HN(CA)CO | 0.5 mM [U-13C; U-15N; U-2H] PD-L2_TM | 90% H2O/10% D2O | 0 mM | 6.5 | 0.1 atm | 310 | Bruker AVANCE 600 |
6 | 3D HN(CO)CA | 0.5 mM [U-13C; U-15N; U-2H] PD-L2_TM | 90% H2O/10% D2O | 0 mM | 6.5 | 0.1 atm | 310 | Bruker AVANCE 600 |
7 | 3D HNCACB | 0.5 mM [U-13C; U-15N; U-2H] PD-L2_TM | 90% H2O/10% D2O | 0 mM | 6.5 | 0.1 atm | 310 | Bruker AVANCE 600 |
8 | 3D 1H-15N NOESY | 0.5 mM [U-13C; U-15N] PD-L2_TM | 90% H2O/10% D2O | 0 mM | 6.5 | 0.1 atm | 310 | Bruker AVANCE 900 |
9 | 3D 1H-13C NOESY | 0.5 mM [U-13C; U-15N] PD-L2_TM | 90% H2O/10% D2O | 0 mM | 6.5 | 0.1 atm | 310 | Bruker AVANCE 900 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 900 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 15 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
2 | structure calculation | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
3 | chemical shift assignment | XEASY | Bartels et al. | |
4 | peak picking | XEASY | Bartels et al. | |
5 | collection | TopSpin | Bruker Biospin | |
6 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |