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Crystal Structure of Intracellular B30.2 Domain of BTN2A1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5ZXK 5ZXK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 289 0.4 M potassium sodium tartrate
Crystal Properties Matthews coefficient Solvent content 2.38 48.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.957 α = 90 b = 78.889 β = 90 c = 41.682 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2020-07-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.9793 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.56 50 99.6 0.095 0.099 0.027 4.7 12.7 35687
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.56 1.59 93.5 0.471 0.495 0.151 0.947 10.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5ZXK 1.56 28.67 33873 1768 99.67 0.1558 0.1549 0.1694 0.1732 0.187 RANDOM 17.193
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.46 0.38 1.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.478 r_dihedral_angle_4_deg 15.757 r_dihedral_angle_3_deg 10.276 r_dihedral_angle_1_deg 7.75 r_angle_refined_deg 1.824 r_angle_other_deg 1.483 r_chiral_restr 0.098 r_bond_refined_d 0.014 r_gen_planes_refined 0.011 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.478 r_dihedral_angle_4_deg 15.757 r_dihedral_angle_3_deg 10.276 r_dihedral_angle_1_deg 7.75 r_angle_refined_deg 1.824 r_angle_other_deg 1.483 r_chiral_restr 0.098 r_bond_refined_d 0.014 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1673 Nucleic Acid Atoms Solvent Atoms 249 Heterogen Atoms 1
Software Software Software Name Purpose SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction Coot model building PHASER phasing HKL-2000 data reduction