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Crystal structure of ASCT from Trypanosoma brucei in complex with CoA.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6LP1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 293 0.05M HEPES-NAOH BUFFER PH 7.4, 18% (W/V) PEG 3350, 0.35M CaCl2
Crystal Properties Matthews coefficient Solvent content 2.32 46.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.789 α = 90 b = 165.146 β = 90 c = 188.584 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-12-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.90000 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.79 50 98.6 0.219 0.219 0.99 8.2 6.6 46801
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.79 2.96 97.2 0.739 0.811 0.801 2.3 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.79 19.9 44447 2242 98.49 0.22632 0.2234 0.2237 0.28406 0.2787 RANDOM 47.877
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.12 r_dihedral_angle_3_deg 16.641 r_dihedral_angle_4_deg 12.131 r_dihedral_angle_1_deg 6.688 r_long_range_B_refined 4.063 r_long_range_B_other 4.063 r_mcangle_it 2.514 r_mcangle_other 2.514 r_scangle_other 2.07 r_mcbond_it 1.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.12 r_dihedral_angle_3_deg 16.641 r_dihedral_angle_4_deg 12.131 r_dihedral_angle_1_deg 6.688 r_long_range_B_refined 4.063 r_long_range_B_other 4.063 r_mcangle_it 2.514 r_mcangle_other 2.514 r_scangle_other 2.07 r_mcbond_it 1.44 r_mcbond_other 1.44 r_angle_refined_deg 1.28 r_scbond_it 1.191 r_scbond_other 1.191 r_angle_other_deg 0.919 r_chiral_restr 0.071 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14060 Nucleic Acid Atoms Solvent Atoms 34 Heterogen Atoms 104
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing