X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental model 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1EVAPORATION2930.2 M BIS-TRIS pH 7.0, 20% PEG 4,000
Crystal Properties
Matthews coefficientSolvent content
2.2144.41

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 100.87α = 90
b = 100.87β = 90
c = 59.48γ = 90
Symmetry
Space GroupI 4

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER2 S 9M2022-10-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL02U10.97910SSRFBL02U1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.77227.4599.730.16060.16680.044920.99915.7113.67680
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.7722.87198.532.3142.4170.68950.5651.85

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.777227.45730338299.740.206650.2030.2816RANDOM76.013
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.472.47-4.94
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.462
r_dihedral_angle_3_deg21.044
r_dihedral_angle_4_deg20.167
r_scangle_other10.391
r_mcangle_it8.78
r_mcangle_other8.777
r_scbond_it6.91
r_scbond_other6.907
r_dihedral_angle_1_deg6.336
r_mcbond_it6.094
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.462
r_dihedral_angle_3_deg21.044
r_dihedral_angle_4_deg20.167
r_scangle_other10.391
r_mcangle_it8.78
r_mcangle_other8.777
r_scbond_it6.91
r_scbond_other6.907
r_dihedral_angle_1_deg6.336
r_mcbond_it6.094
r_mcbond_other6.093
r_angle_refined_deg1.388
r_angle_other_deg1.222
r_chiral_restr0.052
r_bond_refined_d0.007
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2053
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms27

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata scaling
XDSdata reduction
PHENIXphasing