Experiment: 8HUA

X-RAY DIFFRACTION

Serial Crystallography (SX)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	5NDC

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	LIPIDIC CUBIC PHASE	5.3	298	1.4 M NaCl, 100 mM MES pH 5.3 with 36 % to 39 % (v/v) PEG 400

Crystal Properties
Matthews coefficient	Solvent content
3.3	62.69

Symmetry
Space Group	C 1 2 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	298	PIXEL	DECTRIS EIGER X 16M		2019-12-13	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	MAX IV BEAMLINE BioMAX	0.98	MAX IV	BioMAX

Sample delivery method
Diffraction ID	Description	Sample Delivery Method
1		injection

Injection
Diffraction ID	Description	Flow Rate	Injector Diameter	Injection Power	Injector Nozzle	Filter Size	Carrier Solvent
1	Capillary-based flow-cell	1.2 (µl/min)	undefined (µm)

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.12	25.802	100	0.99	6.8	123.6		65010

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.12	2.2			0.52

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	2.12	25.802	63185	3207	99.932	0.154	0.152	0.1606	0.1844	0.1865	48.819

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.014		0.007	-0.016		-0.004

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.985
r_dihedral_angle_4_deg	21.384
r_dihedral_angle_3_deg	14.473
r_lrange_it	8.128
r_lrange_other	8.128
r_scangle_it	6.886
r_scangle_other	6.885
r_dihedral_angle_1_deg	6.262
r_mcangle_it	4.861
r_mcangle_other	4.861

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.985
r_dihedral_angle_4_deg	21.384
r_dihedral_angle_3_deg	14.473
r_lrange_it	8.128
r_lrange_other	8.128
r_scangle_it	6.886
r_scangle_other	6.885
r_dihedral_angle_1_deg	6.262
r_mcangle_it	4.861
r_mcangle_other	4.861
r_scbond_it	4.689
r_scbond_other	4.688
r_mcbond_it	3.664
r_mcbond_other	3.662
r_angle_refined_deg	1.72
r_angle_other_deg	1.276
r_symmetry_nbd_refined	0.272
r_symmetry_xyhbond_nbd_refined	0.222
r_nbd_refined	0.221
r_nbd_other	0.188
r_symmetry_nbd_other	0.178
r_nbtor_refined	0.174
r_xyhbond_nbd_refined	0.13
r_metal_ion_refined	0.12
r_chiral_restr	0.083
r_symmetry_nbtor_other	0.079
r_bond_refined_d	0.009
r_gen_planes_refined	0.009
r_gen_planes_other	0.006
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	5910
Nucleic Acid Atoms
Solvent Atoms	104
Heterogen Atoms	384

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8HUA | pdb_00008hua