8HGA
Monomer structure of transforming growth factor beta induced protein (TGFBIp) G623R fibril
SOLID-STATE NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | NCA | 10 mg/mL [U-100% 13C; U-100% 15N] TGFBIp G623R | ethanol/water | 20 mM | 8 | 1 atm | 286 | Bruker AVANCE III 800 |
7 | NCO | 10 mg/mL [U-100% 13C; U-100% 15N] TGFBIp G623R | ethanol/water | 20 mM | 8 | 1 atm | 286 | Bruker AVANCE III 800 |
3 | DARR | 10 mg/mL [U-100% 13C; U-100% 15N] TGFBIp G623R | ethanol/water | 20 mM | 8 | 1 atm | 286 | Bruker AVANCE III 800 |
4 | NCACX | 10 mg/mL [U-100% 13C; U-100% 15N] TGFBIp G623R | ethanol/water | 20 mM | 8 | 1 atm | 286 | Bruker AVANCE III 800 |
5 | NCOCX | 10 mg/mL [U-100% 13C; U-100% 15N] TGFBIp G623R | ethanol/water | 20 mM | 8 | 1 atm | 286 | Bruker AVANCE III 800 |
6 | CANCO | 10 mg/mL [U-100% 13C; U-100% 15N] TGFBIp G623R | ethanol/water | 20 mM | 8 | 1 atm | 286 | Bruker AVANCE III 800 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 800 |
NMR Refinement | ||
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Method | Details | Software |
molecular dynamics | GROMACS |
NMR Ensemble Information | |
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Conformer Selection Criteria | back calculated data agree with experimental NOESY spectrum |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | data analysis | TopSpin | Bruker Biospin | |
2 | chemical shift assignment | NMRFAM-SPARKY | Lee W, Tonelli M, Markley JL | |
3 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
4 | refinement | GROMACS | Paul Bauer, Berk Hess, Erik Lindahl |