8H8L

Crystal structure of apo-R52F/E56F/R59F/E63F-rHLFr

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		293	Ammonium sulphate, Cadmium sulphate

Crystal Properties
Matthews coefficient	Solvent content
3.12	60.6

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 181.31	α = 90
b = 181.31	β = 90
c = 181.31	γ = 90

Symmetry
Space Group	F 4 3 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	93	PIXEL	RIGAKU HyPix-6000HE		2022-03-01	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE	RIGAKU PhotonJet-R	1.5418

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.5	20.279	100	1	30.4	10.2		41282

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.5	1.53			0.951

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1DAT	1.5	20.279	41193	2051	99.724	0.157	0.1564	0.1712	10.481

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	35.957
r_dihedral_angle_4_deg	16.012
r_dihedral_angle_3_deg	12.784
r_lrange_it	5.094
r_dihedral_angle_1_deg	4.789
r_lrange_other	4.529
r_scangle_it	2.754
r_scangle_other	2.749
r_angle_refined_deg	1.886
r_scbond_it	1.839
r_mcangle_other	1.837
r_mcangle_it	1.835
r_scbond_other	1.805
r_angle_other_deg	1.617
r_mcbond_it	1.113
r_mcbond_other	1.108
r_symmetry_nbd_refined	0.377
r_nbd_refined	0.25
r_nbd_other	0.216
r_nbtor_refined	0.188
r_symmetry_xyhbond_nbd_refined	0.168
r_xyhbond_nbd_refined	0.162
r_symmetry_nbd_other	0.158
r_symmetry_metal_ion_refined	0.148
r_metal_ion_refined	0.111
r_chiral_restr	0.096
r_symmetry_nbtor_other	0.088
r_bond_refined_d	0.014
r_gen_planes_refined	0.01
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1386
Nucleic Acid Atoms
Solvent Atoms	241
Heterogen Atoms	20

Software

Software
Software Name	Purpose
REFMAC	refinement
CrysalisPro	data reduction
Aimless	data scaling
MOLREP	phasing