☰ Navigation Tabs
Human SARM1 bounded with NMN and Nanobody-C6, double-layer structure
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7DJT experimental model PDB 5F1K
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 13.473 f_angle_d 1.098 f_chiral_restr 0.064 f_bond_d 0.01 f_plane_restr 0.007
Sample Human SARM1 bounded with NMN and Nanobody-C6, double-layer structure
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details Blot time: 4s
Blot force: -2
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 208299 Reported Resolution (Å) 2.7 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (7DJT, 5F1K) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 1.28
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 1000 Maximum Defocus (nm) 2500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 130000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION SerialEM CTF CORRECTION RELION 3.1.2 MODEL FITTING PHENIX 1.16 MODEL REFINEMENT PHENIX 1.16 INITIAL EULER ASSIGNMENT cisTEM 1.0.0 FINAL EULER ASSIGNMENT cisTEM 1.0.0 CLASSIFICATION cisTEM 1.0.0 RECONSTRUCTION cisTEM 1.0.0
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 3089111