8F37

AbdA Homeodomain NMR Solution Structure


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.857 mM [U-100% 13C; U-100% 15N] AbdAHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Agilent INOVA AVANCE 600
22D 1H-13C HSQC aliphatic0.857 mM [U-100% 13C; U-100% 15N] AbdAHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Agilent INOVA AVANCE 600
32D 1H-13C HSQC aromatic0.857 mM [U-100% 13C; U-100% 15N] AbdAHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Agilent INOVA AVANCE 600
43D HNCA0.857 mM [U-100% 13C; U-100% 15N] AbdAHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Agilent INOVA AVANCE 600
53D HNCO0.857 mM [U-100% 13C; U-100% 15N] AbdAHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Agilent INOVA AVANCE 600
93D HN(CO)CA0.857 mM [U-100% 13C; U-100% 15N] AbdAHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Agilent INOVA AVANCE 600
83D HCCH-TOCSY aromatic0.857 mM [U-100% 13C; U-100% 15N] AbdAHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Agilent INOVA AVANCE 600
73D HCCH-TOCSY aliphatic0.857 mM [U-100% 13C; U-100% 15N] AbdAHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Agilent INOVA AVANCE 600
63D HN(CA)CO0.857 mM [U-100% 13C; U-100% 15N] AbdAHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Agilent INOVA AVANCE 600
103D C(CO)NH0.857 mM [U-100% 13C; U-100% 15N] AbdAHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Agilent INOVA AVANCE 600
123D CBCA(CO)NH0.857 mM [U-100% 13C; U-100% 15N] AbdAHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Agilent INOVA AVANCE 600
113D HNCACB0.857 mM [U-100% 13C; U-100% 15N] AbdAHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Agilent INOVA AVANCE 600
143D 1H-15N NOESY0.857 mM [U-100% 13C; U-100% 15N] AbdAHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Agilent INOVA AVANCE 600
133D 1H-13C NOESY aromatic0.857 mM [U-100% 13C; U-100% 15N] AbdAHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Agilent INOVA AVANCE 600
153D 1H-13C NOESY aliphatic0.857 mM [U-100% 13C; U-100% 15N] AbdAHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Agilent INOVA AVANCE 600
163D H(CCO)NH0.857 mM [U-100% 13C; U-100% 15N] AbdAHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Agilent INOVA AVANCE 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1AgilentINOVA AVANCE600
NMR Refinement
MethodDetailsSoftware
simulated annealingCYANA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementCYANAGuntert
2chemical shift assignmentNMRViewJ9.1.0-b63One Moon Scientific
3peak pickingNMRViewJ9.1.0-b63One Moon Scientific
4processingNMRDrawDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
5structure calculationCYANAGuntert