8EF4
Solution structural bundle of bivalirudin - a bivalent hirudin based thrombin inhibitor
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 13C HSQC | 16.67 mg/mL bivalirudin, 20 mM sodium phosphate | 90% H2O/10% D2O | 20 mM | 4.6 | 1 atm | 298 | Bruker AVANCE III 600 |
2 | 2D 13C HSQC TOCSY | 16.67 mg/mL bivalirudin, 20 mM sodium phosphate | 90% H2O/10% D2O | 20 mM | 4.6 | 1 atm | 298 | Bruker AVANCE III 600 |
3 | 2D 13C HMBC | 16.67 mg/mL bivalirudin, 20 mM sodium phosphate | 90% H2O/10% D2O | 20 mM | 4.6 | 1 atm | 298 | Bruker AVANCE III 600 |
4 | 2D 15N HSQC | 16.67 mg/mL bivalirudin, 20 mM sodium phosphate | 90% H2O/10% D2O | 20 mM | 4.6 | 1 atm | 298 | Bruker AVANCE III 600 |
5 | 2D 15N HSQC TOCSY | 16.67 mg/mL bivalirudin, 20 mM sodium phosphate | 90% H2O/10% D2O | 20 mM | 4.6 | 1 atm | 298 | Bruker AVANCE III 600 |
6 | 2D 1H NOESY | 16.67 mg/mL bivalirudin, 20 mM sodium phosphate | 90% H2O/10% D2O | 20 mM | 4.6 | 1 atm | 298 | Bruker AVANCE III 600 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 5 |
Representative Model | 1 (medoid) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | processing | TopSpin | Bruker Biospin | |
3 | chemical shift assignment | Sparky | Goddard | |
4 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
5 | structure calculation | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore |