8DOH

Dehaloperoxidase B in complex with Bisphenol F

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	3IXF

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	6.5	277	MPEG 2000, Ammonium Sulfate, Sodium Cacodylate

Crystal Properties
Matthews coefficient	Solvent content
2.2	44.2

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 59.672	α = 90
b = 67.281	β = 90
c = 67.704	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	RAYONIX MX300-HS		2021-04-18	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 22-BM	1.000	APS	22-BM

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.75	37.56	98.81	0.056	0.027	0.997	23.45	4.7		34127

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.75	1.79			0.802

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	3IXF	1.75	37.298	27973	1397	98.806	0.172	0.1697	0.2197	19.776

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.856			-0.179		-0.677

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	37.195
r_dihedral_angle_4_deg	21.78
r_dihedral_angle_3_deg	17.437
r_dihedral_angle_1_deg	6.767
r_lrange_it	6.591
r_lrange_other	6.553
r_scangle_it	2.591
r_scangle_other	2.584
r_angle_refined_deg	2.045
r_scbond_it	1.691
r_scbond_other	1.686
r_angle_other_deg	1.627
r_mcangle_other	1.533
r_mcangle_it	1.531
r_mcbond_it	1.019
r_mcbond_other	1.013
r_symmetry_nbd_refined	0.291
r_nbd_refined	0.255
r_nbd_other	0.254
r_symmetry_xyhbond_nbd_refined	0.217
r_symmetry_nbd_other	0.197
r_nbtor_refined	0.188
r_xyhbond_nbd_refined	0.17
r_symmetry_xyhbond_nbd_other	0.14
r_chiral_restr	0.103
r_xyhbond_nbd_other	0.095
r_symmetry_nbtor_other	0.084
r_bond_refined_d	0.014
r_gen_planes_refined	0.012
r_gen_planes_other	0.006
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2139
Nucleic Acid Atoms
Solvent Atoms	187
Heterogen Atoms	143

Software

Software
Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing