8DNL
Acidipropionibacterium acidipropionici encapsulin in an open state at pH 7.5
ELECTRON MICROSCOPY
Sample |
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Acidipropionibacterium acidipropionici encapsulin in an open state at pH 7.5 |
Specimen Preparation | |
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Sample Aggregation State | PARTICLE |
Vitrification Instrument | FEI VITROBOT MARK IV |
Cryogen Name | ETHANE |
Sample Vitrification Details | Additional settings were : Blot force- 20, blot time - 4 seconds, drain time - 0 seconds, wait time - 0 seconds |
3D Reconstruction | |
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Reconstruction Method | SINGLE PARTICLE |
Number of Particles | 13581 |
Reported Resolution (Å) | 3.32 |
Resolution Method | FSC 0.143 CUT-OFF |
Other Details | |
Refinement Type | |
Symmetry Type | POINT |
Point Symmetry | I |
Map-Model Fitting and Refinement | |||||
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Id | 1 | ||||
Refinement Space | REAL | ||||
Refinement Protocol | AB INITIO MODEL | ||||
Refinement Target | Correlation coefficient | ||||
Overall B Value | 77.81 | ||||
Fitting Procedure | |||||
Details | A starting model was created using RosettaFold. The starting model was placed in the map manually using UCSF Chimera. The model was then further refin ... |
Data Acquisition | |||||||||
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Detector Type | GATAN K2 SUMMIT (4k x 4k) | ||||||||
Electron Dose (electrons/Å**2) | 41 |
Imaging Experiment | 1 |
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Date of Experiment | |
Temperature (Kelvin) | |
Microscope Model | FEI TALOS ARCTICA |
Minimum Defocus (nm) | 800 |
Maximum Defocus (nm) | 1800 |
Minimum Tilt Angle (degrees) | |
Maximum Tilt Angle (degrees) | |
Nominal CS | 2.7 |
Imaging Mode | BRIGHT FIELD |
Specimen Holder Model | |
Nominal Magnification | 45000 |
Calibrated Magnification | |
Source | FIELD EMISSION GUN |
Acceleration Voltage (kV) | 200 |
Imaging Details |
EM Software | ||
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Task | Software Package | Version |
PARTICLE SELECTION | cryoSPARC | 3.3.1 |
IMAGE ACQUISITION | Leginon | |
CTF CORRECTION | cryoSPARC | 3.3.1 |
MODEL FITTING | PHENIX | |
MODEL FITTING | UCSF Chimera | |
INITIAL EULER ASSIGNMENT | cryoSPARC | 3.3.1 |
FINAL EULER ASSIGNMENT | cryoSPARC | 3.3.1 |
RECONSTRUCTION | cryoSPARC | 3.3.1 |
MODEL REFINEMENT | Coot | |
MODEL REFINEMENT | PHENIX |
Image Processing | ||||
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CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
PHASE FLIPPING AND AMPLITUDE CORRECTION |