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Yeast mitochondrial small subunit assembly intermediate (State 2)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5MRC
Sample Yeast mitochondrial small subunit assembly intermediate (State 2)
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 54519 Reported Resolution (Å) 3.13 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (5MRC) Refinement Space REAL Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 61.73
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 1000 Maximum Defocus (nm) 2500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification 64000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION crYOLO IMAGE ACQUISITION SerialEM CTF CORRECTION Gctf 1.18 MODEL FITTING UCSF Chimera MODEL FITTING Coot 0.9.5 INITIAL EULER ASSIGNMENT RELION 3.1.1 FINAL EULER ASSIGNMENT RELION 3.1.1 RECONSTRUCTION PHENIX 1.19 MODEL REFINEMENT PHENIX 1.19
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 3286640