☰ Navigation Tabs
apo Pseudomonas aeruginosa FabF C164A mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7OC0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 0.20M ammonium formate and 31.2% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.04 39.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.837 α = 90 b = 72.496 β = 90 c = 139.592 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2021-08-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 0.976246 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 47.63 96.8 0.089 0.996 12.7 7.2 126727
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 94.9 0.3 0.949 4.9 6.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 47.67 120077 6629 96.65 0.14309 0.14132 0.1557 0.17474 0.1861 RANDOM 18.797
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.1 -0.11 -0.38 0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.214 r_dihedral_angle_4_deg 16.212 r_dihedral_angle_3_deg 13.794 r_dihedral_angle_1_deg 7.096 r_long_range_B_refined 5.377 r_long_range_B_other 5.275 r_scangle_other 4.163 r_scbond_it 2.661 r_scbond_other 2.661 r_mcangle_it 2.266
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.214 r_dihedral_angle_4_deg 16.212 r_dihedral_angle_3_deg 13.794 r_dihedral_angle_1_deg 7.096 r_long_range_B_refined 5.377 r_long_range_B_other 5.275 r_scangle_other 4.163 r_scbond_it 2.661 r_scbond_other 2.661 r_mcangle_it 2.266 r_mcangle_other 2.266 r_angle_refined_deg 1.664 r_mcbond_it 1.589 r_mcbond_other 1.589 r_angle_other_deg 1.517 r_chiral_restr 0.088 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12312 Nucleic Acid Atoms Solvent Atoms 1295 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing