8CIR

The FERM domain of human moesin with a bound peptide identified by phage display


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 6TXQ 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.5277200 mM sodium bromide, 100 mM bis-tris-propane, 10% ethylene glycol, 20% PEG3350
Crystal Properties
Matthews coefficientSolvent content
2.6152.9

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 45.466α = 90
b = 155.391β = 94.28
c = 63.607γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER2 XE 16M2022-04-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.9763DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8577.71000.9977.813.274812
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.851.8999.60.3470.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1.8577.69674759193399.960.1790.17770.240830.484
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.484-0.396-0.5210.095
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg16.061
r_dihedral_angle_3_deg14.652
r_dihedral_angle_2_deg9.928
r_lrange_it8.92
r_lrange_other8.824
r_scangle_it6.746
r_scangle_other6.745
r_dihedral_angle_1_deg6.537
r_mcangle_it4.861
r_mcangle_other4.86
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg16.061
r_dihedral_angle_3_deg14.652
r_dihedral_angle_2_deg9.928
r_lrange_it8.92
r_lrange_other8.824
r_scangle_it6.746
r_scangle_other6.745
r_dihedral_angle_1_deg6.537
r_mcangle_it4.861
r_mcangle_other4.86
r_scbond_it4.534
r_scbond_other4.533
r_mcbond_it3.555
r_mcbond_other3.546
r_angle_refined_deg1.635
r_angle_other_deg0.54
r_symmetry_nbd_refined0.24
r_nbd_refined0.226
r_xyhbond_nbd_refined0.211
r_symmetry_xyhbond_nbd_refined0.203
r_symmetry_nbd_other0.187
r_nbtor_refined0.18
r_nbd_other0.18
r_ncsr_local_group_10.094
r_ncsr_local_group_20.087
r_chiral_restr0.081
r_symmetry_nbtor_other0.078
r_symmetry_xyhbond_nbd_other0.065
r_chiral_restr_other0.032
r_bond_refined_d0.011
r_gen_planes_refined0.009
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5913
Nucleic Acid Atoms
Solvent Atoms840
Heterogen Atoms89

Software

Software
Software NamePurpose
REFMACrefinement
DIALSdata reduction
Aimlessdata scaling
PHASERphasing