8CHN

The FK1 domain of FKBP51 in complex with (1S,5S,6R)-10-((S)-(3,5-dichlorophenyl)sulfonimidoyl)-3-(pyridin-2-ylmethyl)-5-vinyl-3,10-diazabicyclo[4.3.1]decan-2-one

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	5OBK

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		293	32% PEG3350, 0.2 M ammonium acetate, 0.1M HEPES-NaOH pH 7.5

Crystal Properties
Matthews coefficient	Solvent content
2.28	46.16

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 42.22	α = 90
b = 54.047	β = 90
c = 56.085	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 S 6M		2022-09-10	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	BESSY BEAMLINE 14.1	0.918400	BESSY	14.1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	0.99	42.22	99.8	0.037	0.043	0.022	0.999	18	6.9		71936

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	0.99	1.01			0.852	1.003	0.524	0.683		6.6

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	0.99	38.948	71869	3489	99.671	0.19	0.1892	0.1967	12.045

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.01			0.17		-0.16

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	17.217
r_dihedral_angle_3_deg	13.366
r_dihedral_angle_1_deg	7.66
r_dihedral_angle_2_deg	5.251
r_lrange_it	4.344
r_lrange_other	4.033
r_scangle_it	2.309
r_scangle_other	2.308
r_angle_refined_deg	1.884
r_scbond_it	1.618
r_scbond_other	1.616
r_chiral_restr_other	1.55
r_mcangle_it	1.416
r_mcangle_other	1.415
r_mcbond_it	1.007
r_mcbond_other	1.007
r_angle_other_deg	0.719
r_symmetry_xyhbond_nbd_refined	0.314
r_nbd_refined	0.213
r_nbd_other	0.213
r_symmetry_nbd_other	0.194
r_symmetry_nbd_refined	0.192
r_nbtor_refined	0.182
r_xyhbond_nbd_refined	0.139
r_chiral_restr	0.136
r_symmetry_nbtor_other	0.084
r_gen_planes_refined	0.015
r_bond_refined_d	0.014
r_bond_other_d	0.003
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	961
Nucleic Acid Atoms
Solvent Atoms	174
Heterogen Atoms	31

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing