☰ Navigation Tabs
The structures of Ace2 in complex with bicyclic peptide inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1R42
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 25 %v/v PEGSH (Precipitant)
10 %v/v Glycerol (Precipitant)
0.2 M MgCl2 (Salt)
0.1 M TRIS 8 pH (Buffer)
Crystal Properties Matthews coefficient Solvent content 2.09 41.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 193.253 α = 90 b = 55.793 β = 114.09 c = 122.843 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2022-04-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9179 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.61 112.23 100 0.349 0.361 0.092 0.996 5.5 15.6 36877
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.61 2.66 100 6.329 6.544 1.65 0.329 0.3 15.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1R42 2.61 58.75 34960 1827 99.33 0.25903 0.25548 0.2693 0.32464 0.3278 RANDOM 72.392
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.46 -0.82 8.44 -5.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 18.041 r_dihedral_angle_2_deg 12.683 r_long_range_B_refined 11.943 r_long_range_B_other 11.943 r_mcangle_it 8.142 r_mcangle_other 8.142 r_scangle_other 6.841 r_dihedral_angle_1_deg 6.378 r_mcbond_it 5.231 r_mcbond_other 5.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 18.041 r_dihedral_angle_2_deg 12.683 r_long_range_B_refined 11.943 r_long_range_B_other 11.943 r_mcangle_it 8.142 r_mcangle_other 8.142 r_scangle_other 6.841 r_dihedral_angle_1_deg 6.378 r_mcbond_it 5.231 r_mcbond_other 5.23 r_scbond_it 4.297 r_scbond_other 4.297 r_angle_refined_deg 1.309 r_angle_other_deg 0.477 r_chiral_restr 0.076 r_bond_refined_d 0.005 r_gen_planes_refined 0.005 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10013 Nucleic Acid Atoms Solvent Atoms 77 Heterogen Atoms 3
Software Software Software Name Purpose REFMAC refinement xia2 data scaling DIALS data reduction PHASER phasing