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Murine amyloid-beta filaments with the Arctic mutation (E22G) from APP(NL-G-F) mouse brains | ABeta
Refinement RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 19.356 r_long_range_B_other 19.342 r_dihedral_angle_3_deg 16.894 r_mcangle_it 12.734 r_mcangle_other 12.728 r_scangle_other 12.613 r_dihedral_angle_1_deg 8.366 r_mcbond_other 7.948 r_mcbond_it 7.941 r_scbond_it 7.268
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 19.356 r_long_range_B_other 19.342 r_dihedral_angle_3_deg 16.894 r_mcangle_it 12.734 r_mcangle_other 12.728 r_scangle_other 12.613 r_dihedral_angle_1_deg 8.366 r_mcbond_other 7.948 r_mcbond_it 7.941 r_scbond_it 7.268 r_scbond_other 7.256 r_dihedral_angle_2_deg 3.51 r_angle_refined_deg 1.243 r_angle_other_deg 0.525 r_chiral_restr 0.062 r_bond_refined_d 0.005 r_gen_planes_refined 0.005 r_gen_planes_other 0.003 r_bond_other_d r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Amyloid-beta filaments extracted from the mouse brains with APP NL-G-F mutations
Specimen Preparation Sample Aggregation State FILAMENT Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method HELICAL Number of Particles 39823 Reported Resolution (Å) 3.5 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type HELICAL Axial Symmetry C1 Axial Rise 2.46009 Angular Rotation 179.347
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 40
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 1000 Maximum Defocus (nm) 2600 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION RELION IMAGE ACQUISITION EPU CTF CORRECTION RELION MODEL FITTING Coot MODEL REFINEMENT REFMAC INITIAL EULER ASSIGNMENT RELION FINAL EULER ASSIGNMENT RELION CLASSIFICATION RELION RECONSTRUCTION RELION
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION