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Cysteine Synthase from Leishmania Infantum
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4AIR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 Sodium Chloride, Bis-Tris, PEG 3350
Crystal Properties Matthews coefficient Solvent content 1.98 37.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.879 α = 90 b = 87.759 β = 90 c = 138.073 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2021-07-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.987 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 87.77 99.6 0.991 11.96 11.8 60590
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.78 0.805
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 4AIR 1.75 74.175 60520 3030 99.554 0.166 0.1641 0.1648 0.2052 0.2059 23.883
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.126 -0.665 0.791
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.783 r_dihedral_angle_6_deg 13.679 r_dihedral_angle_2_deg 10.974 r_lrange_it 7.111 r_lrange_other 7.067 r_dihedral_angle_1_deg 5.982 r_scangle_it 4.967 r_scangle_other 4.966 r_mcangle_it 3.801 r_mcangle_other 3.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.783 r_dihedral_angle_6_deg 13.679 r_dihedral_angle_2_deg 10.974 r_lrange_it 7.111 r_lrange_other 7.067 r_dihedral_angle_1_deg 5.982 r_scangle_it 4.967 r_scangle_other 4.966 r_mcangle_it 3.801 r_mcangle_other 3.8 r_scbond_it 3.227 r_scbond_other 3.227 r_mcbond_it 2.432 r_mcbond_other 2.426 r_angle_refined_deg 1.475 r_angle_other_deg 0.507 r_symmetry_xyhbond_nbd_other 0.256 r_nbd_refined 0.235 r_nbd_other 0.2 r_symmetry_xyhbond_nbd_refined 0.197 r_symmetry_nbd_other 0.194 r_symmetry_nbd_refined 0.192 r_xyhbond_nbd_refined 0.178 r_nbtor_refined 0.169 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.073 r_xyhbond_nbd_other 0.02 r_bond_refined_d 0.008 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4516 Nucleic Acid Atoms Solvent Atoms 404 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHASER phasing