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Subtomogram average of the human Sec61-TRAP-OSTA-translocon
Sample Sec61-TRAP-OSTA translocon complex
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE-PROPANE Sample Vitrification Details Manual plunger
3D Reconstruction Reconstruction Method SUBTOMOGRAM AVERAGING Number of Particles 42215 Reported Resolution (Å) 7.6 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type 3D CRYSTAL Space Group Name Length a 600 Length b 600 Length c 600 Angle Alpha 90 Angle Beta 90 Angle Gamma 90
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 2.3
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TALOS ARCTICA Minimum Defocus (nm) 3000 Maximum Defocus (nm) 3000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification 79000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version VOLUME SELECTION PyTom 0.994 IMAGE ACQUISITION SerialEM 3.8 IMAGE ACQUISITION DigitalMicrograph 3.3.2 CTF CORRECTION Warp MODEL FITTING UCSF Chimera MODEL REFINEMENT PHENIX MODEL REFINEMENT ISOLDE MODEL REFINEMENT Coot FINAL EULER ASSIGNMENT RELION 3.1.1 CLASSIFICATION RELION 3.1.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION Estimation and correction in WARP/M