8ATP

Small molecule stabilizer (1075481) for ERalpha and 14-3-3


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2770.095 M HEPES (pH 7.1), 26% (v/v) PEG400, 0.19 CaCl2, 5% (v/v) Glycerol
Crystal Properties
Matthews coefficientSolvent content
2.6653.72

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 82.113α = 90
b = 112.517β = 90
c = 62.496γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2021-05-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPETRA III, DESY BEAMLINE P111.033200PETRA III, DESYP11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.445.5399.79134.113.456961
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.41.4520.99

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4JC31.445.5354061290099.770.129210.127810.15548RANDOM13.804
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.190.34-0.15
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.444
r_dihedral_angle_4_deg17.209
r_dihedral_angle_3_deg10.917
r_dihedral_angle_1_deg4.509
r_long_range_B_refined3.651
r_long_range_B_other3.055
r_rigid_bond_restr2.492
r_scangle_other2.384
r_scbond_it1.878
r_scbond_other1.877
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.444
r_dihedral_angle_4_deg17.209
r_dihedral_angle_3_deg10.917
r_dihedral_angle_1_deg4.509
r_long_range_B_refined3.651
r_long_range_B_other3.055
r_rigid_bond_restr2.492
r_scangle_other2.384
r_scbond_it1.878
r_scbond_other1.877
r_angle_refined_deg1.692
r_mcangle_it1.592
r_mcangle_other1.592
r_angle_other_deg1.322
r_mcbond_it1.156
r_mcbond_other1.155
r_chiral_restr0.112
r_bond_refined_d0.015
r_gen_planes_refined0.009
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1899
Nucleic Acid Atoms
Solvent Atoms357
Heterogen Atoms30

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
xia2data reduction
DIALSdata scaling
REFMACphasing