8ARJ

Anaplastic Lymphoma Kinase with a novel carboline inhibitor


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2860.15 M ammonium sulphate, 9-10.5% monomethyl ether poly (ethylene glycol) (MW 5000), and 0.1 M MES buffer pH 5.3 - 5.6
Crystal Properties
Matthews coefficientSolvent content
2.141.34

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 51.714α = 90
b = 56.593β = 90
c = 103.243γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2018-10-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.9159DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.64546.281940.0690.0760.030.99912.76.326023
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.6451.82158.71.2871.4160.5830.351.65.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE4CLI1.64546.28126023134969.2820.1980.19660.228740.512
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.102-0.3020.404
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg17.118
r_dihedral_angle_2_deg16.4
r_dihedral_angle_6_deg16.257
r_lrange_other10.294
r_lrange_it10.292
r_scangle_it6.819
r_scangle_other6.817
r_dihedral_angle_1_deg6.297
r_mcangle_it5.086
r_mcangle_other5.086
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg17.118
r_dihedral_angle_2_deg16.4
r_dihedral_angle_6_deg16.257
r_lrange_other10.294
r_lrange_it10.292
r_scangle_it6.819
r_scangle_other6.817
r_dihedral_angle_1_deg6.297
r_mcangle_it5.086
r_mcangle_other5.086
r_scbond_it4.369
r_scbond_other4.367
r_mcbond_it3.312
r_mcbond_other3.31
r_angle_refined_deg1.536
r_angle_other_deg0.525
r_nbd_refined0.218
r_symmetry_nbd_other0.198
r_symmetry_nbd_refined0.192
r_nbd_other0.185
r_nbtor_refined0.179
r_xyhbond_nbd_refined0.151
r_symmetry_nbtor_other0.079
r_chiral_restr0.077
r_symmetry_xyhbond_nbd_refined0.031
r_chiral_restr_other0.014
r_gen_planes_refined0.008
r_bond_refined_d0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2119
Nucleic Acid Atoms
Solvent Atoms63
Heterogen Atoms33

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
autoPROCdata scaling
MOLREPphasing