SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1 mM [U-100% 15N] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E, 1 mM RNA (5'-R(*AP*AP*UP*AP*AP*A)-3'), 40 mM sodium chloride, 40 mM sodium phosphate90% H2O/10% D2O80 mM7AMBIENT Pa310.15Bruker AVANCE III 900
22D 1H-13C HSQC aliphatic1 mM [U-100% 13C; U-100% 15N] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E, 1 mM RNA (5'-R(*AP*AP*UP*AP*AP*A)-3'), 40 mM sodium chloride, 40 mM sodium phosphate90% H2O/10% D2O80 mM7AMBIENT Pa310.15Bruker AVANCE III 900
32D 1H-13C HSQC aromatic1 mM [U-100% 13C; U-100% 15N] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E, 1 mM RNA (5'-R(*AP*AP*UP*AP*AP*A)-3'), 40 mM sodium chloride, 40 mM sodium phosphate90% H2O/10% D2O80 mM7AMBIENT Pa310.15Bruker AVANCE III 900
42D 1H-13C HSQC aliphatic1 mM [U-100% 15N] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E, 1 mM RNA (5'-R(*AP*AP*UP*AP*AP*A)-3'), 40 mM sodium chloride, 40 mM sodium phosphate90% H2O/10% D2O80 mM7AMBIENT Pa310.15Bruker AVANCE III 700
52D 1H-13C HSQC aromatic1 mM [U-100% 15N] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E, 1 mM RNA (5'-R(*AP*AP*UP*AP*AP*A)-3'), 40 mM sodium chloride, 40 mM sodium phosphate90% H2O/10% D2O80 mM7AMBIENT Pa310.15Bruker AVANCE III 700
83D 1H-15N NOESY1 mM [U-100% 15N] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E, 1 mM RNA (5'-R(*AP*AP*UP*AP*AP*A)-3'), 40 mM sodium chloride, 40 mM sodium phosphate90% H2O/10% D2O80 mM7AMBIENT Pa310.15Bruker AVANCE III 900
73D 1H-13C NOESY aliphatic1 mM [U-100% 13C; U-100% 15N] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E, 1 mM RNA (5'-R(*AP*AP*UP*AP*AP*A)-3'), 40 mM sodium chloride, 40 mM sodium phosphate90% H2O/10% D2O80 mM7AMBIENT Pa310.15Bruker AVANCE III 900
63D 1H-13C NOESY aromatic1 mM [U-100% 13C; U-100% 15N] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E, 1 mM RNA (5'-R(*AP*AP*UP*AP*AP*A)-3'), 40 mM sodium chloride, 40 mM sodium phosphate90% H2O/10% D2O80 mM7AMBIENT Pa310.15Bruker AVANCE III 900
93D F3-FILTERED- F2-EDITED 13C NOESY1 mM [U-100% 13C; U-100% 15N] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E, 1 mM RNA (5'-R(*AP*AP*UP*AP*AP*A)-3'), 40 mM sodium chloride, 40 mM sodium phosphate90% H2O/10% D2O80 mM7AMBIENT Pa310.15Bruker AVANCE III 900
102D F2- FILTERED NOESY1 mM [U-100% 13C; U-100% 15N] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E, 1 mM RNA (5'-R(*AP*AP*UP*AP*AP*A)-3'), 40 mM sodium chloride, 40 mM sodium phosphate90% H2O/10% D2O80 mM7AMBIENT Pa310.15Bruker AVANCE III 900
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III900
2BrukerAVANCE III700
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number250
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementAmber10Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
2structure calculationCYANA3.96Guntert, Mumenthaler and Wuthrich
4chemical shift assignmentSparkyGoddard
5peak pickingSparkyGoddard