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X-ray structure of the adduct obtained upon reaction of [Rh2(OCOCH3)(OCOCF3)3] with HEWL
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 193L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 0.10 M HEPES pH 7.5
2.00 M sodium formate
Crystal Properties Matthews coefficient Solvent content 2.02 39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.61 α = 90 b = 78.61 β = 90 c = 37.41 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2021-05-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 1.00 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 39.31 98.8 0.052 0.015 1 32.1 23.3 18041
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.53 1.56 100 1.749 0.5 0.752 2.1 25.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 193L 1.53 39.31 17998 927 98.608 0.198 0.1954 0.1949 0.2485 0.2486 27.279
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.013 -0.013 0.025
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.154 r_dihedral_angle_4_deg 20.94 r_dihedral_angle_3_deg 15.026 r_dihedral_angle_1_deg 6.944 r_lrange_it 6.701 r_lrange_other 6.355 r_scangle_it 4.573 r_scangle_other 4.57 r_scbond_it 2.948 r_scbond_other 2.937
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.154 r_dihedral_angle_4_deg 20.94 r_dihedral_angle_3_deg 15.026 r_dihedral_angle_1_deg 6.944 r_lrange_it 6.701 r_lrange_other 6.355 r_scangle_it 4.573 r_scangle_other 4.57 r_scbond_it 2.948 r_scbond_other 2.937 r_mcangle_other 2.667 r_mcangle_it 2.666 r_mcbond_it 1.972 r_mcbond_other 1.964 r_angle_refined_deg 1.735 r_angle_other_deg 1.456 r_nbd_refined 0.268 r_symmetry_xyhbond_nbd_refined 0.207 r_symmetry_nbd_refined 0.201 r_symmetry_nbd_other 0.195 r_xyhbond_nbd_refined 0.192 r_ext_dist_refined_d 0.177 r_nbd_other 0.171 r_nbtor_refined 0.165 r_metal_ion_refined 0.142 r_chiral_restr 0.09 r_symmetry_nbtor_other 0.084 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 154 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction autoPROC data scaling PHASER phasing