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Human Lysophosphatidic Acid Receptor 1-Gi complex bound to ONO-0740556, state4
Refinement RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 87.076 r_long_range_B_other 87.075 r_scangle_other 70.685 r_mcangle_it 58.345 r_mcangle_other 58.34 r_scbond_it 46.017 r_scbond_other 46.012 r_mcbond_it 38.394 r_mcbond_other 38.373 r_dihedral_angle_2_deg 30.633
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 87.076 r_long_range_B_other 87.075 r_scangle_other 70.685 r_mcangle_it 58.345 r_mcangle_other 58.34 r_scbond_it 46.017 r_scbond_other 46.012 r_mcbond_it 38.394 r_mcbond_other 38.373 r_dihedral_angle_2_deg 30.633 r_dihedral_angle_3_deg 16.821 r_dihedral_angle_4_deg 13.316 r_dihedral_angle_1_deg 6.581 r_angle_refined_deg 2.117 r_angle_other_deg 1.922 r_chiral_restr 0.087 r_bond_refined_d 0.02 r_gen_planes_refined 0.01 r_bond_other_d 0.009 r_gen_planes_other 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Human Lysophosphatidic Acid Receptor 1-Gi complex bound to ONO-0740556 Sample Components Lysophosphatidic Acid Receptor 1 Guanine nucleotide-binding protein G(i) subunit alpha-1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 scFv16
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 51335 Reported Resolution (Å) 5.6 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 2500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION