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Human Lysophosphatidic Acid Receptor 1-Gi complex bound to ONO-0740556, state2
Refinement RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 46.529 r_long_range_B_other 46.529 r_scangle_other 35.103 r_dihedral_angle_2_deg 30.884 r_mcangle_it 28.593 r_mcangle_other 28.591 r_scbond_it 22.17 r_scbond_other 22.168 r_mcbond_other 18.932 r_mcbond_it 18.931
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 46.529 r_long_range_B_other 46.529 r_scangle_other 35.103 r_dihedral_angle_2_deg 30.884 r_mcangle_it 28.593 r_mcangle_other 28.591 r_scbond_it 22.17 r_scbond_other 22.168 r_mcbond_other 18.932 r_mcbond_it 18.931 r_dihedral_angle_3_deg 15.386 r_dihedral_angle_4_deg 13.441 r_dihedral_angle_1_deg 5.49 r_angle_other_deg 1.648 r_angle_refined_deg 1.595 r_chiral_restr 0.076 r_bond_other_d 0.032 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Human Lysophosphatidic Acid Receptor 1-Gi complex bound to ONO-0740556 Sample Components Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 Guanine nucleotide-binding protein G(i) subunit alpha-1 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 Lysophosphatidic Acid Receptor 1 scFv16
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 127465 Reported Resolution (Å) 3.9 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 2500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION