7WOJ

Crystal structure of HSA-Myr complex soaked with cisplatin for one week


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3TDL 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.529726-32% PEG 3350, 50mM PB at pH 7.5
Crystal Properties
Matthews coefficientSolvent content
1.9536.82

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 169.91α = 90
b = 36.69β = 105.41
c = 90.01γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2010-11-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL17U0.932SSRFBL17U

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.895099.80.1560.97314.87.412296
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.8931004.6520.2540.87.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3TDL2.8943.411019456286.580.25890.25750.2839RANDOM87.872
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.480.65-1.18-0.58
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.496
r_dihedral_angle_3_deg18.896
r_mcangle_it17.744
r_mcbond_it12.07
r_mcbond_other12.069
r_dihedral_angle_4_deg10.804
r_dihedral_angle_1_deg6.284
r_angle_refined_deg1.956
r_angle_other_deg1.524
r_chiral_restr0.087
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.496
r_dihedral_angle_3_deg18.896
r_mcangle_it17.744
r_mcbond_it12.07
r_mcbond_other12.069
r_dihedral_angle_4_deg10.804
r_dihedral_angle_1_deg6.284
r_angle_refined_deg1.956
r_angle_other_deg1.524
r_chiral_restr0.087
r_gen_planes_other0.018
r_bond_refined_d0.015
r_gen_planes_refined0.011
r_bond_other_d0.009
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4360
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms118

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data scaling
BALBESphasing