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Cryo-EM structure of the human ATP13A2 (SPM-bound E2Pi state)
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.445 r_dihedral_angle_3_deg 20.317 r_long_range_B_refined 19.898 r_long_range_B_other 19.898 r_dihedral_angle_4_deg 15.41 r_dihedral_angle_1_deg 7.004 r_mcangle_it 4.133 r_mcangle_other 4.133 r_mcbond_it 2.161 r_mcbond_other 2.161
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.445 r_dihedral_angle_3_deg 20.317 r_long_range_B_refined 19.898 r_long_range_B_other 19.898 r_dihedral_angle_4_deg 15.41 r_dihedral_angle_1_deg 7.004 r_mcangle_it 4.133 r_mcangle_other 4.133 r_mcbond_it 2.161 r_mcbond_other 2.161 r_scangle_other 2.022 r_angle_refined_deg 1.879 r_angle_other_deg 1.174 r_scbond_it 0.836 r_scbond_other 0.836 r_chiral_restr 0.094 r_bond_other_d 0.024 r_gen_planes_refined 0.009 r_bond_refined_d 0.007 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 3834 Reported Resolution (Å) 3.78 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space RECIPROCAL Refinement Protocol AB INITIO MODEL Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 60
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION SerialEM CTF CORRECTION CTFFIND MODEL FITTING REFMAC MODEL REFINEMENT REFMAC INITIAL EULER ASSIGNMENT RELION 3.1 FINAL EULER ASSIGNMENT RELION 3.1 RECONSTRUCTION RELION 3.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION