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Structure of ESRP1 qRRM3 domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7VKI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.2 M Potassium sodium tartrate tetrahydrate, 20% w/v Polyethylene glycol 3350
Crystal Properties Matthews coefficient Solvent content 2.47 50.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.572 α = 90 b = 102.813 β = 90 c = 107.141 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2018-11-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.97911 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 30 93.8 0.105 0.109 0.031 0.996 26.176 12.6 2073014 13.77
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.5 99.6 0.966 1.006 0.278 0.876 3.214 12.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 7VKI 1.45 29.347 163064 8155 93.163 0.171 0.1705 0.1711 0.1899 0.1905 15.672
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.21 0.354 -0.143
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.155 r_dihedral_angle_4_deg 12.938 r_dihedral_angle_3_deg 11.238 r_dihedral_angle_1_deg 6.378 r_lrange_it 5.52 r_lrange_other 5.413 r_scangle_it 4.219 r_scangle_other 4.217 r_scbond_it 2.701 r_scbond_other 2.701
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.155 r_dihedral_angle_4_deg 12.938 r_dihedral_angle_3_deg 11.238 r_dihedral_angle_1_deg 6.378 r_lrange_it 5.52 r_lrange_other 5.413 r_scangle_it 4.219 r_scangle_other 4.217 r_scbond_it 2.701 r_scbond_other 2.701 r_mcangle_it 2.414 r_mcangle_other 2.414 r_angle_refined_deg 1.915 r_mcbond_it 1.592 r_mcbond_other 1.587 r_angle_other_deg 1.524 r_symmetry_nbd_refined 0.249 r_nbd_refined 0.222 r_nbd_other 0.213 r_symmetry_nbd_other 0.185 r_nbtor_refined 0.174 r_xyhbond_nbd_refined 0.17 r_symmetry_xyhbond_nbd_refined 0.137 r_chiral_restr 0.105 r_symmetry_nbtor_other 0.082 r_symmetry_xyhbond_nbd_other 0.034 r_bond_refined_d 0.014 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6570 Nucleic Acid Atoms Solvent Atoms 934 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling PHASER phasing